1 Abstract

The bioinformatics analysis pipeline juliaapolonio/MR_workflow is a pipeline for Mendelian Randomization and sensitivity analysis between a given GWAS sumstats and QTL data.

2 Pipeline Results

2.1 Volcano Plot

2.2 Forest Plot

2.3 Full Results

3 Nextflow and pipeline information

Technical information to the pipeline run are collected in folder pipeline_info, including software versions collected at runtime in file software_versions.yml (can be viewed with a text editor), all parameter settings in file params_{date}_{time}.json (can be viewed with a text editor), execution report in file execution_report_{date}_{time}.html, execution trace in file execution_trace_{date}_{time}.txt, execution timeline in file execution_timelime_{date}_{time}.html, and pipeline direct acyclic graph (DAG) in file pipeline_dag_{date}_{time}.html.

4 Final notes

This report (file summary_report.html) is located in folder summary_report of the original pipeline results folder. In this file, all links to files and folders are relative, therefore hyperlinks will only work when the report is at its original place in the pipeline results folder. Plots specifically produced for this report (if any) can be also found in folder summary_report.

Please cite the pipeline publication and any software tools used by the pipeline (see citations) when you use any of the pipeline results in your study.